Description | No. of heads and SNPs |
---|---|
Total number of animals | 2,037 |
Animals with missing SNPs over 0.10% | 59 |
Selected animals | 1,978 |
Total number of SNPs | 61,565 |
SNPs with unknown position | 7,849 |
SNPs on sex chromosome (X, Y) | 1,458 |
Number of SNPs on autosome (1–18) | 52,258 |
Selected (useful) SNPs: | 39,603 |
Outlier SNPs | 12,669 |
- All homo SNPs | 4,280 |
- All hetero SNPs | 2 |
- SNPs with missing > 10% | 510 |
- SNPs with minor allele frequency < 1% | 6,786 |
- SNPs with Hardy-Weinberg equilibrium test > 23.93 | 1,091 |