Table 4. Linkage disequilibrium (r²) by chromosome

Chromosome no	No. of SNPs	No. of SNP pairs	Linkage disequilibrium (r²)
Chromosome no	No. of SNPs	No. of SNP pairs	All pairs	Adjacent pairs
1	4,552	10,358,076	0.04	0.45
2	2,744	3,763,396	0.03	0.39
3	2,045	2,089,990	0.03	0.41
4	2,657	3,528,496	0.03	0.40
5	1,756	1,540,890	0.03	0.37
6	2,582	3,332,071	0.03	0.39
7	2,535	3,211,845	0.03	0.40
8	2,156	2,323,090	0.04	0.41
9	2,575	3,314,025	0.03	0.37
10	1,426	1,016,025	0.02	0.35
11	1,271	807,085	0.03	0.39
12	1,184	700,336	0.03	0.41
13	3,186	5,073,705	0.03	0.40
14	3,095	4,787,965	0.04	0.44
15	2,201	2,421,100	0.03	0.42
16	1,378	948,753	0.03	0.38
17	1,314	862,641	0.04	0.40
18	946	446,985	0.04	0.42
Overal	39,603	50,526,474	0.03	0.40

SNP, single nucleotide polymorphism.