Table 9. List of all downregulated proteins in MAC-T cell supplemented with 0.6 mM D-Met and HMBi

Protein ID Protein name Score (Protein probability > 95%) %emPAI (Semi quantification)
Con D-Met HMBi Con D-Met HMBi
1 IPI01001130 MYH9 myosin, heavy chain 9, non-muscle 181 - - 0.488 -* -*
2 IPI00699981 LOC617745 histone cluster 1, H2bd-like 133 74 - 0.517 0.720 -*
3 IPI00697107 TUBB2A Tubulin beta-2B chain 102 - - 0.460 -* -*
4 IPI01003935 LOC781223 histone cluster 1, H4j-like 93 - - 0.833 -* -*
5 IPI00700324 HNRNPUL2 Uncharacterized protein 86 - - 0.115 -* -*
6 IPI01000167 AHNAK AHNAK nucleoprotein 74 89 - 0.029 0.040 -*
7 IPI00689857 PRDX6 Peroxiredoxin-6 141 91 34 2.958 1.320* 0.643*
8 IPI00883375 MTAP;PRDX3 PRDX3 protein 60 - - 0.345 -* -*
9 IPI00710783 HBA1;HBA Hemoglobin subunit alpha 81 - - 0.747 -* -*
10 IPI00688839 NENF Neudesin 61 - - 0.603 -* -*
11 IPI00686173 GSTP1 Glutathione S-transferase P 83 38 39 1.637 0.640* 1.500
12 IPI00706942 TPI1 Triosephosphate isomerase 86 62 - 2.010 -* -*
13 IPI00711327 CDH1 CDH1 protein 51 - - 0.115 -* -*
14 IPI00903886 NME2 Nucleoside diphosphate kinase 32 - 51 0.373 -* 1.157
15 IPI00718337 STMN1 Stathmin 53 - - 0.632 -* -*
16 IPI00685112 USP5 ubiquitin specific peptidase 5 (isopeptidase T) isoform 2 85 73 - 0.115 0.160 -*
17 IPI00694304 CLU Clusterin 49 - - 0.201 -* -*
18 IPI00968674 HMGCS1 hydroxymethylglutaryl-CoA synthase, cytoplasmic 41 - - 0.172 - -
19 IPI00695201 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 41 - - 0.287 -* -*
20 IPI00701642 PGD 6-phosphogluconate dehydrogenase, decarboxylating 49 39 - 0.431 0.280 -*
21 IPI00712785 COPB1 Coatomer subunit beta 44 - - 0.086 -* -*
22 IPI00727752 PLCD1 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase delta-1-like 42 - - 0.115 -* -*
23 IPI00697851 KRT5 Keratin, type II cytoskeletal 5 33 - 27 0.172 -* 0.514
24 IPI00715690 CTNNA1 Catenin alpha-1 32 30 - 0.230 0.160 -*
25 IPI00689750 LMNA Uncharacterized protein 44 - - 0.144 -* -*
26 IPI00699723 RANBP6 Uncharacterized protein 27 - 63 0.230 -* 0.343
27 IPI00715354 SFN 14-3-3 protein sigma 72 - - 2.556 -* -*
28 IPI00690789 MVD Diphosphomevalonate decarboxylase 37 - - 0.258 -* -*
29 IPI00698874 DCPS Scavenger mRNA-decapping enzyme DcpS 37 - - 0.287 -* -*
30 IPI00685732 EEF1B2 Elongation factor 1-beta 37 - - 0.431 -* -*
31 IPI00718050 DYNLRB1 Dynein light chain roadblock-type 1 37 - - 1.034 -* -*
32 IPI00713760 GDI2 Rab GDP dissociation inhibitor beta 59 29 - 0.201 0.280 -*
33 IPI00710020 S100A14 Protein S100-A14 36 - - 1.005 -* -*
34 IPI01003068 LOC100337475 ribosomal protein SA-like 23 - - 0.603 -* -*
35 IPI00685123 TLN1 talin-1 41 47 - 0.029 0.040 -*
36 IPI00692093 ANXA5 Annexin A5 53 - 36 0.287 -* 0.428
37 IPI01001213 TCHH trichohyalin isoform 1 37 33 - 0.057 0.080 -*
38 IPI00709590 KRT4 KRT4 protein 35 - - 0.172 -* -*
39 IPI00760419 RPS21 40S ribosomal protein S21 28 41 - 1.292 1.800 -*
40 IPI00845184 KRT6A KRT6A protein 33 - 38 0.172 -* 0.257
41 IPI00694938 SERPINH1 Serpin H1 39 - - 0.230 -* -*
42 IPI00695508 CALM3;CALM Calmodulin 32 - 29 0.661 -* 0.985
43 IPI00715508 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma 31 - - 0.431 -* -*
44 IPI00691137 LOC100137883;LOC100297716;TMSB4 Thymosin beta-4 31 - - 0.7237 -* -*
45 IPI00686092 PRDX1 Peroxiredoxin-1 48 15 - 0.488 0.680 -*
46 IPI00705354 ATOX1 Copper transport protein ATOX1 24 - 17 1.637 -* 2.442
47 IPI00702790 MACF1 microtubule-actin cross-linking factor 1 30 - - 0.029 -* -*
48 IPI00686546 CCT2 T-complex protein 1 subunit beta 31 58 - 0.172 1.240 -*
49 IPI00718444 CTNND1 catenin delta-1 28 19 - 0.086 0.120 -*
50 IPI00687409 LOC100336093;MYL12B Myosin regulatory light chain 12B 37 - - 0.574 -* -*
51 IPI00699092 TTC39B tetratricopeptide repeat domain 39B 29 - - 0.144 -* -*
52 IPI00693929 DCTN2 Dynactin subunit 2 24 21 - 0.230 0.320 -*
53 IPI00694142 MIF Macrophage migration inhibitory factor 31 26 - 0.919 1.280 -*
54 IPI00710727 VCP Transitional endoplasmic reticulum ATPase 39 - 28 0.230 -* 0.171
55 IPI00712042 RNH1 Ribonuclease/angiogenin inhibitor 1 37 19 - 0.230 0.320 -*
56 IPI00707751 EEF2 Elongation factor 2 47 - 28 0.115 -* 0.171
57 IPI00712133 FASN Fatty acid synthase 36 27 19 0.086 0.120 0.043*
58 IPI00706632 EEF1G Elongation factor 1-gamma 33 - 23 0.431 -* 0.300
59 IPI00906952 Uncharacterized protein 33 - - 0.316 -* -*
60 IPI00695419 DBI Acyl-CoA-binding protein 36 - - 1.149 -* -*
61 IPI00924223 ZEB2 Uncharacterized protein 27 - - 0.086 -* -*
62 IPI01017521 ASPM Abnormal spindle-like microcephaly-associated protein homolog (Fragment) 27 - - 0.029 -* -*
63 IPI00709465 P4HB Protein disulfide-isomerase 27 - - 0.201 -* -*
64 IPI00688816 CLTC Clathrin heavy chain 1 36 28 - 0.057 0.080 -*
65 IPI00691663 PLS1 Plastin-1 40 22 - 0.144 0.200 -*
66 IPI00716748 BCAM Basal cell adhesion molecule 33 19 - 0.144 0.200 -*
67 IPI00713901 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 29 23 - 29 23 -*
68 IPI00704353 TUBA4A Tubulin alpha-4A chain 29 23 - 0.201 0.280 -*
69 IPI00711750 ARPC3 Actin-related protein 2/3 complex subunit 3 32 - - 0.546 -* -*
70 IPI01001324 LOC533883 KIAA1671 protein-like 25 - - 0.057 -* -*
71 IPI00714708 DHX9 ATP-dependent RNA helicase A 25 - - 0.086 -* -*
72 IPI00903876 Uncharacterized protein 25 - - 0.747 -* -*
73 IPI00701894 JUP Junction plakoglobin 35 14 - 0.144 0.200 -*
74 IPI00711338 LONP2 Lon protease homolog 2, peroxisomal 24 - - 0.115 -* -*
75 IPI00698179 HSPA4 Uncharacterized protein 17 - - 0.115 -* -*
76 IPI00704325 WARS Tryptophanyl-tRNA synthetase, cytoplasmic 23 - - 0.201 -* -*
77 IPI00690680 HDDC3 HD domain-containing protein 3 23 - - 0.546 -* -*
78 IPI00727417 MSN Moesin 29 16 - 0.144 0.200 -*
79 IPI01002905 HSPD1 60 kDa heat shock protein, mitochondrial 30 23 - 0.546 0.240* -*
80 IPI00713536 RPS12 40S ribosomal protein S12 22 25 - 0.775 1.080 -*
81 IPI00685613 LOC100295775 Uncharacterized protein 20 21 - 0.976 1.360 -*
82 IPI01004262 LOC100337442 ribosomal protein L35-like 29 - 13 0.172 -* 0.257
83 IPI01028151 STAT1 134 kDa protein 24 - 24 0.086 -* 0.129
84 IPI00715345 PC Pyruvate carboxylase, mitochondrial 16 - 32 0.086 -* 0.129
85 IPI00696935 HNRNPD Uncharacterized protein 19 22 - 0.287 0.400 -*
86 IPI01003143 SHROOM2 SHROOM2-like, partial 21 - - 0.057 -* -*
87 IPI00709517 DIAPH1 diaphanous homolog 1-like 24 - - 0.086 -* -*
88 IPI00700509 CCT7 T-complex protein 1 subunit eta 24 - 20 0.172 -* 0.257
89 IPI00716534 DDX1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 1 20 - - 0.115 -* -*
90 IPI00685601 RPS3 40S ribosomal protein S3 20 - - 0.402 -* -*
91 IPI00710247 KPNB1 Uncharacterized protein 15 - - 0.115 -* -*
92 IPI00698249 MYH10 Nonmuscle myosin heavy chain B (Fragment) 20 - - 1.149 -* -*
93 IPI00689902 NPM1 Nucleophosmin 16 - 16 0.345 -* 0.514
94 IPI00692105 SELV selenoprotein V 14 - 13 0.258 -* 0.386
Downregulated proteins in MAC-T cell supplemented with 0.6 mM D-Met and HMBi related to control.
MAC-T, immortalized bovine mammary epithelial cell line; D-Met, D-methionine; HMBi, 2-hydroxy-4-methylthiobutanoic acid i.