Target | Primer | Sequence, 5ʹ to 3ʹ | Annealing T (°C) | Product size (bp) | References |
---|---|---|---|---|---|
Total bacteria | 27f | AGAGTTTGATCMTGGCTCAG | 55 | 1,535 | [ |
1525r | AAGGAGGTGWTCCARCC | ||||
Total bacteria (qPCR) | Eub358f | TCCTACGGGAGGCAGCAGT | 60 | 448 | [ |
Eub806r | GGACTACCAGGGTATCTAATCCTGTT | ||||
| P. rumi-F | GGTTATCTTGAGTGAGTT | 53 | 485 | [ |
P. rumi-R | CTGATGGCAACTAAAGAA | ||||
| C. amin-57F | ACGGAAATTACAGAAGGAAG | 57 | 560 | [ |
C. amin-616R | GTTTCCAAAGCAATTCCAC | ||||
| C. stick-185F | ATCAAAGAATTTCGGATAGG | 61 | 442 | [ |
C. stick-626R | CAAGTTCACCAGTTTCAGAG | ||||
| P. anae-73F | TGCTTGCAYTRATGAAAGATG | 55 | 570 | This study |
P. anae-642R | TCTTCCAGTTTCGGAGGCTA |