Table 3. Differentially expressed miRNAs identified by miRDeep2 in liver between divergent feed efficiency pigs
Mature SSC ID | Ref miRNA | FC(H/L) | p-value | Mature sequence |
ssc-miR-10386 | | −5.86 | >1.05E-41 | gucguccucucccucccuccu |
ssc-miR-26b-5p | hsa-miR-26a-5p | 1.04 | 2.41E-05 | uucaaguaauucaggauagguu |
ssc-miR-1839-5p | | −1.61 | 6.92E-05 | aagguagauagaacaggucuug |
ssc-miR-155-5p | hsa-miR-155-5p | 1.15 | 0.000556 | uuaaugcuaauugugauagggg |
ssc-miR-454 | hsa-miR-130a-3p | 1.57 | 0.00074 | uagugcaauauugcuuauagggu |
ssc-miR-455-5p | hsa-miR-455-5p | 1.02 | 0.003295 | uaugugccuuuggacuacaucg |
ssc-miR-185 | hsa-miR-185-5p | −1.07 | 0.016294 | uggagagaaaggcaguuccuga |
ssc-miR-193a-5p | hsa-miR-193a-5p | −1.17 | 0.020914 | ugggucuuugcgggcgagauga |
ssc-miR-24-2-5p | hsa-miR-24-3p | 1.00 | 0.021422 | gugccuacugagcugauaucagu |
ssc-miR-29a-5p | hsa-miR-29a-3p | 2.16 | 0.021715 | acugauuucuuuugguguucag |
ssc-miR-16 | hsa-miR-15a-5p | 1.11 | 0.027376 | uagcagcacguaaauauuggcg |
ssc-miR-125b | hsa-miR-125b-5p | −1.03 | 0.032728 | ucccugagacccuaacuuguga |
ssc-miR-135 | hsa-miR-135a-5p | 1.35 | 0.037177 | uauggcuuuuuauuccuauguga |
ssc-miR-96-5p | hsa-miR-96-5p | 1.27 | 0.04017 | uuuggcacuagcacauuuuugcu |
SSC, sus scrofa chromosome; FC, log2(Fold Change) level.