Table 8. List of all upregulated proteins in MAC-T cell supplemented with 0.6 mM D-Met and HMBi

Protein ID Protein name Score (Protein probability > 95%) %emPAI (Semi quantification)
Con D-Met HMBi Con D-Met HMBi
1 IPI00700035 HSPA1A Heat shock 70 kDa protein 1B 175 191 254 0.316 0.440 0.728*
2 IPI00710719 AHNAK AHNAK nucleoprotein isoform 1 - - 61 - - 0.043*
3 IPI00696012 MYH9 myosin, heavy chain 9, non-muscle - 230 74 - 0.560* 0.343*
4 IPI00716130 UBA1 Uncharacterized protein 105 161 143 0.172 0.240 0.428*
5 IPI01017790 PDIA6 protein disulfide-isomerase A6 123 97 149 0.460 1.000 1.071
6 IPI00889470 LOC617875 histone H4-like - - 97 - - 3.556*
7 IPI00699333 ANXA8L1 Annexin A8 118 84 61 0.632 0.880 0.457*
8 IPI00867095 ALDOA Fructose-bisphosphate aldolase 98 116 70 0.574 1.240* 0.857
9 IPI00691199 LOC525863 Histone H4 - 80 - - 3.280* -
10 IPI01002058 NME1-NME2 protein-like - 75 - - 1.320* -
11 IPI00699002 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B - 107 36 - 0.520* 0.557*
12 IPI00708046 TUBB2B Tubulin beta-5 chain - 76 75 - 0.640* 1.028*
13 IPI00717000 LOC617264 Uncharacterized protein - 76 80 - 0.480* 0.514*
14 IPI00710895 PGK1 Phosphoglycerate kinase 1 86 94 43 0.230 1.080* 0.343
15 IPI00688257 HNRNPU Heterogeneous nuclear ribonucleoprotein U - 37 32 - 0.160* 0.171*
16 IPI00903886 NME2 Nucleoside diphosphate kinase 32 - 51 0.373 - 1.157*
17 IPI00734138 HNRNPH1 Uncharacterized protein - 21 39 - 0.280* 0.300*
18 IPI00707320 YWHAQ 14-3-3 protein theta - - 47 - - 1.243*
19 IPI00715044 KRT17 Keratin, type I cytoskeletal 17 - 62 58 - 0.640* 0.686*
20 IPI00710991 PLS3 Plastin 3 51 31 46 0.144 0.440* 0.471*
21 IPI00695994 COPS3 COP9 signalosome complex subunit 3 - 45 - - 0.320* -
22 IPI00697851 KRT5 Keratin, type II cytoskeletal 5 33 - 27 0.172 - 0.514*
23 IPI00691963 CALR Calreticulin 56 25 39 0.230 0.320 0.686*
24 IPI01004191 FLNB filamin-B - 38 - - 0.040* -
25 IPI00867349 CAST protein (Fragment) - 19 20 - 0.160* 0.171*
26 IPI00707656 ANXA3 Annexin A3 - 19 28 - 0.400* 0.428*
27 IPI00699280 RPSA Similar to 40S ribosomal protein SA (Fragment) - 37 - - 0.840* -
28 IPI00839940 PLCD1 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase delta-1 - - 23 - - 0.171*
29 IPI00698663 S100A4 Protein S100-A4 - 35 34 - 1.360* 1.457*
30 IPI00713814 GAPDH Glyceraldehyde-3-phosphate dehydrogenase - - 31 - - 0.428*
31 IPI00717685 STIP1 Stress-induced-phosphoprotein 1 - 43 - - 0.240* -
32 IPI00712250 MDH2 Malate dehydrogenase, mitochondrial - 23 30 - 0.440* 0.471*
33 IPI00713144 LRRC16B leucine-rich repeat-containing protein 16B - 31 - - 0.080* -
34 IPI00903900 HIST3H2BB Histone H2B - - 31 - - 1.114*
35 IPI00841695 CCT4 T-complex protein 1 subunit delta 29 43 37 0.172 0.520* 0.557*
36 IPI01028198 - 18 kDa protein - 30 - - 0.880* -
37 IPI00692963 SEC23A Protein transport protein Sec23A - - 20 - - 0.171*
38 IPI00708921 KRT18 keratin, type I cytoskeletal 18 - - 30 - - 0.343*
39 IPI00695841 TMSB10 Thymosin beta-10 - 31 - - 3.680* -
40 IPI00696435 YWHAE 14-3-3 protein epsilon - 16 - - 0.520* -
41 IPI00696263 CAPNS1 Calpain small subunit 1 - 27 - - 0.560* -
42 IPI00692247 HSPA9 Stress-70 protein, mitochondrial 41 18 16 0.144 0.200 0.428*
43 IPI00709051 AGR2 Anterior gradient homolog 2 - 28 - - 0.760* -
44 IPI00714624 CCT3 T-complex protein 1 subunit gamma - 26 - - 0.240* -
45 IPI00715091 RPS20 40S ribosomal protein S20 - - 26 - - 1.285*
46 IPI00709865 RPSA 40S ribosomal protein SA - - 24 - - 0.471*
47 IPI00715705 IVL IVL protein - 21 - - 0.320* -
48 IPI00867215 LRRC47 LRRC47 protein - 23 - - 0.240* -
49 IPI00724124 OLA1;LOC100335717 Obg-like ATPase 1 - 23 - - 0.320* -
50 IPI00710228 MCRS1 Uncharacterized protein - - 23 - - 0.300*
51 IPI00688180 FLNB Uncharacterized protein - - 17 - - 0.043*
52 IPI00706431 LAD1 Ladinin 1 - - 20 - - 0.300*
53 IPI00703110 YWHAZ 14-3-3 protein zeta/delta - 16 - - 0.560* -
54 IPI00716730 ORC5 ORC5L protein - 22 - - 0.280* -
55 IPI00716013 MYL6 Isoform Smooth muscle of Myosin light polypeptide 6 - 22 - - 0.920* -
56 IPI00702582 ACOT12 Uncharacterized protein - 22 - - 0.240* -
57 IPI01002054 INSR insulin receptor - 22 - - 0.080* -
58 IPI00695895 Uncharacterized protein - - 22 - - 0.257
59 IPI00712889 LAMB3 Laminin, beta 3 - 21 - - 0.120* -
60 IPI00912185 UGT2B11 UDP glucuronosyltransferase 2B10 isoform 1 - 21 - - 0.240* -
61 IPI01002579 KCNC2 potassium voltage-gated channel, Shaw-related subfamily, member 2, partial - 21 - - 0.320* -
62 IPI00711396 ATP6V0A2 V-type proton ATPase 116 kDa subunit a isoform 2 - - 21 - - 0.171*
63 IPI00732001 SPTAN1 Uncharacterized protein - 21 - - 0.040* -
64 IPI00838304 Uncharacterized protein - 20 19 - 0.280* 0.300*
65 IPI00843042 NAP1L4 Nucleosome assembly protein 1-like 4 - - 21 - - 0.386*
66 IPI00717231 ACAA1 Uncharacterized protein - 19 - - 0.320* -
67 IPI01003646 LOC100337336 Kelch-like protein 30-like - 19 17 - 0.360* 0.386*
68 IPI00867250 GAL3ST1 Galactosylceramide sulfotransferase - - 16 - - 0.343*
69 IPI00700826 USP34 hypothetical protein isoform 1 - 14 - - 0.040* -
70 IPI00826303 VPRBP HIV-1 Vpr binding protein, partial - 14 - - 0.080* -
Upregulated proteins in MAC-T cell supplemented with 0.6 mM D-Met and HMBi related to control.
MAC-T, immortalized bovine mammary epithelial cell line; D-Met, D-methionine; HMBi, 2-hydroxy-4-methylthiobutanoic acid i.