Table 7. The results of differentially expressed genes in the small intestine (ileum) between the control and salmonella-infected groups

Ensemble Gene ID	Gene name	CHR	Gene start (bp)	Gene end (bp)	BaseMean	log2Fold-Change	lfcSE	p-value	FDR
ENSSSCG00000013065	ASRGL1	2	9,328,269	9,353,340	1702.892	–1.6315	0.3956	3.7E-05	0.0141
ENSSSCG00000013393	SPON1	2	44,967,984	45,299,677	109.974	1.9623	0.2906	1.4E-11	0.0000
ENSSSCG00000028549	ECM2	3	42,203,121	42,243,547	201.421	1.6594	0.4243	9.2E-05	0.0237
ENSSSCG00000033844	CYP1B1	3	102,195,741	102,206,750	79.045	1.5214	0.3581	2.2E-05	0.0121
ENSSSCG00000034607	OGN	3	42,116,531	42,135,817	491.651	1.5793	0.4000	7.9E-05	0.0221
ENSSSCG00000006038	ZFPM2	4	31,606,751	32,094,340	24.598	1.7665	0.4057	1.3E-05	0.0091
ENSSSCG00000006172	PI15	4	61,114,497	61,142,811	266.100	2.0283	0.3946	2.7E-07	0.0006
ENSSSCG00000000915	DCN	5	91,678,608	91,714,235	1356.792	1.5903	0.3969	6.2E-05	0.0207
ENSSSCG00000023684	MT1A	6	18,660,642	18,673,766	23423.481	–1.9310	0.4387	1.1E-05	0.0085
ENSSSCG00000024911	-	6	18,651,012	18,652,323	46324.146	–1.8918	0.3694	3.0E-07	0.0006
ENSSSCG00000030300	-	6	18,645,059	18,646,033	20681.966	–1.6610	0.4222	8.4E-05	0.0225
ENSSSCG00000033952	CITED4	6	170,324,809	170,326,142	54.996	–1.6365	0.3797	1.6E-05	0.0105
ENSSSCG00000008833	SGCB	8	39,126,925	39,141,517	115.944	1.5609	0.3747	3.1E-05	0.0121
ENSSSCG00000032094	DKK2	8	114,862,228	114,974,322	42.719	1.7752	0.4480	7.4E-05	0.0221
ENSSSCG00000035424	-	8	23,873,398	23,875,795	44.250	1.9346	0.3727	2.1E-07	0.0005
ENSSSCG00000015326	COL1A2	9	74,173,931	74,210,398	3350.901	1.5222	0.3640	2.9E-05	0.0121
ENSSSCG00000015357	MEOX2	9	84,943,197	85,010,157	35.228	2.1193	0.4219	5.1E-07	0.0008
ENSSSCG00000036452	LRRC17	9	103,062,867	103,122,481	37.128	1.6271	0.4485	2.9E-04	0.0498
ENSSSCG00000009334	HSPH1	11	7,733,874	7,759,576	3412.740	1.5735	0.4083	1.2E-04	0.0273
ENSSSCG00000011695	AGTR1	13	88,934,868	88,983,131	23.765	1.7807	0.4416	5.5E-05	0.0198
ENSSSCG00000016031	CALCRL	15	92,233,269	92,332,385	151.667	2.1586	0.3687	4.8E-09	0.0000
ENSSSCG00000016034	COL3A1	15	93,556,912	93,615,815	12025.443	1.6813	0.3971	2.3E-05	0.0121
ENSSSCG00000016035	COL5A2	15	93,611,856	93,981,110	921.477	1.5032	0.3597	2.9E-05	0.0121
ENSSSCG00000016823	-	16	20,005,744	20,060,164	57.101	1.8525	0.3788	1.0E-06	0.0013
ENSSSCG00000007170	CPXM1	17	32,845,254	32,852,063	38.501	1.7570	0.4152	2.3E-05	0.0121
ENSSSCG00000026605	BPI	17	41,344,939	41,392,100	131.627	–1.6669	0.3992	3.0E-05	0.0121
ENSSSCG00000018092	ND6	MT	14,739	15,266	7467.134	–1.9277	0.2412	1.3E-15	0.0000
ENSSSCG00000018093	-	MT	15,267	15,335	22.801	–1.9059	0.3828	6.4E-07	0.0009
ENSSSCG00000012548	PWWP3B	X	86,785,325	86,814,629	42.179	1.6397	0.3705	9.6E-06	0.0085
ENSSSCG00000012766	BGN	X	124,282,224	124,295,448	101.818	1.7727	0.4447	6.7E-05	0.0211
ENSSSCG00000038569	ARMCX1	X	83,132,792	83,136,923	33.709	1.7022	0.3758	5.9E-06	0.0064

CHR, cycle genes homology region; bp, base pair; lfcSE, standard error of the log2FoldChange estimate; FDR, false discovery rate.