Table 1. Summary of lumpy skin disease virus (LSDV) whole genome analysis compared to LSDV/Thailand/Yasothon/2021 (YST)

No. Province Region Sample received month/year Number of reads Depth of coverage % Identity to YST/2021 Number of differences in nucleotide Affected ORF and protein SNPs Mutation type Amino acid change GenBank accession no.
1 Chiangmai North Oct 2021 9040280 75.1 99.9993 1 1. ORF133, DNA ligase-like protein 1. C →T 1. Transition - OQ253252
2 Khon Kaen Northeast Sep 2022 20025874 274.3 99.9980 3 1. ORF094, putative virion core protein2. ORF144, Kelch-like protein3. ORF148, Ankyrin-like protein 1. G →A2. T → -3. - →A 1. Transition2. Deletion3. Insertion 1. S →F2. FVKT → L3. - OQ267777
3 Nakhon Pathom Central Aug 2022 16664666 25.2 99.9987 2 1. ORF032, Poly(A) polymerase large subunit2. ORF133, DNA ligase-like protein 1. G →A2. G → A 1. Transition2. Transition 1. –2. D →N OQ253250
4 Prachuap Khiri Khan West Jun 2022 7411246 1,803.1 100 0 - - - - OQ253253
5 Trang South Dec 2022 42958694 178.4 100 0 - - - - OQ511520
ORF, open reading frame; SNPs, single nucleotide polymorphisms.