Article

Complete genome sequence of candidate probiotic Limosilactobacillus fermentuum KUFM407

Bogun Kim1, Ji yu Heo1, Xiaoyue Xu1, Hyunju Lee1, Duleepa Pathiraja1, Kim Jae-Young1,2, Yi Hyun Choi1, In-Geol Choi1,*, Sae Hun Kim1,2,**
Author Information & Copyright
1College of Life Sciences and Biotechnology, Korea University, Seoul 02841, Korea.
2Institute of Life Science and Natural Resources, Korea University, Seoul 02841, Korea.
*Corresponding Author: In-Geol Choi, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, Korea, Republic of. Phone: 02-3290-3152. E-mail: igchoi@korea.ac.kr.
**Corresponding Author: Sae Hun Kim, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, Korea, Republic of. Institute of Life Science and Natural Resources, Korea University, Seoul 02841, Korea, Republic of. Phone: 02-3290-3055. E-mail: saehkim@korea.ac.kr.

© Copyright 2023 Korean Society of Animal Science and Technology. This is an Open-Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Abstract

It has been reported that the administration of <italic>Limosilactobacillus fermentum</italic> alleviates diseases such as osteoporosis and colitis. In this study, we report the complete genome sequence of <italic>Limosilactobacillus</italic> <italic>fermentum</italic> KUFM407, a probiotic strain of LAB isolated from Korean traditional fermented food, Kimchi. Whole genome sequencing of <italic>L. fermentum</italic> KUFM407 was performed on the Illumina MiSeq and Oxford Nanopore MinION platform. The genome consisted of one circular chromosome (2,077,616 bp) with a GC content of 51.5% and one circular plasmid sequence (13,931 bp). Genome annotation identified 1,932 protein-coding genes, 15 rRNAs, and 58 tRNAs in the assembly. The function annotation of the predicted proteins revealed genes involved in the biosynthesis of bacteriocin and fatty acids. The complete genome of <italic>L. fermentum</italic> KUFM407 could provide valuable information for the development of new probiotic food and health supplements.

Keywords: Limosilactobacillus fermentum; KUFM407; complete genome sequence; probiotics